The discrepancies in the results of bioinformatics tools for genomic structural annotation

Magdalena Pawełkowicz; Robert Nowak; Paweł Osipowski; Jacek Rymuszka; Katarzyna Świerkula; Michał Wojcieszek; Zbigniew Przybecki

doi:10.1117/12.2074396

25 November 2014 The discrepancies in the results of bioinformatics tools for genomic structural annotation

Magdalena Pawełkowicz, Robert Nowak, Paweł Osipowski, Jacek Rymuszka, Katarzyna Świerkula, Michał Wojcieszek, Zbigniew Przybecki

Author Affiliations +

Proceedings Volume 9290, Photonics Applications in Astronomy, Communications, Industry, and High-Energy Physics Experiments 2014; 92901L (2014) https://doi.org/10.1117/12.2074396
Event: Symposium on Photonics Applications in Astronomy, Communications, Industry and High-Energy Physics Experiments, 2014, Warsaw, Poland

Abstract

A major focus of sequencing project is to identify genes in genomes. However it is necessary to define the variety of genes and the criteria for identifying them. In this work we present discrepancies and dependencies from the application of different bioinformatic programs for structural annotation performed on the cucumber data set from Polish Consortium of Cucumber Genome Sequencing. We use Fgenesh, GenScan and GeneMark to automated structural annotation, the results have been compared to reference annotation.

Citation Download Citation

Magdalena Pawełkowicz, Robert Nowak, Paweł Osipowski, Jacek Rymuszka, Katarzyna Świerkula, Michał Wojcieszek, and Zbigniew Przybecki "The discrepancies in the results of bioinformatics tools for genomic structural annotation", Proc. SPIE 9290, Photonics Applications in Astronomy, Communications, Industry, and High-Energy Physics Experiments 2014, 92901L (25 November 2014); https://doi.org/10.1117/12.2074396

ACCESS THE FULL ARTICLE

INSTITUTIONAL
Select your institution to access the SPIE Digital Library.

SELECT YOUR INSTITUTION

PERSONAL
Sign in with your SPIE account to access your personal subscriptions or to use specific features such as save to my library, sign up for alerts, save searches, etc.

PERSONAL SIGN IN

No SPIE Account? Create one

PURCHASE THIS CONTENT

SUBSCRIBE TO DIGITAL LIBRARY

50 downloads per 1-year subscription

Members: $195

Non-members: $335 ADD TO CART

25 downloads per 1 - year subscription

Members: $145

Non-members: $250 ADD TO CART

PURCHASE SINGLE ARTICLE

Includes PDF, HTML & Video, when available